org.emboss.jemboss.editor
Class Sequence
java.lang.Object
|
+--org.emboss.jemboss.editor.Sequence
- public class Sequence
- extends java.lang.Object
Sequence object
Field Summary |
private java.lang.String |
id
|
private int |
length
|
private java.lang.String |
name
|
private boolean |
protein
|
private java.lang.String |
seq
|
private float |
wt
|
Constructor Summary |
Sequence(java.lang.String seq)
|
Sequence(java.lang.String seq,
float wt)
|
Sequence(java.lang.String name,
java.lang.String seq)
|
Sequence(java.lang.String name,
java.lang.String seq,
int length)
|
Sequence(java.lang.String name,
java.lang.String seq,
int length,
float wt)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
name
private java.lang.String name
seq
private java.lang.String seq
length
private int length
wt
private float wt
id
private java.lang.String id
protein
private boolean protein
Sequence
public Sequence(java.lang.String name,
java.lang.String seq,
int length,
float wt)
Sequence
public Sequence(java.lang.String name,
java.lang.String seq,
int length)
Sequence
public Sequence(java.lang.String name,
java.lang.String seq)
Sequence
public Sequence(java.lang.String seq)
Sequence
public Sequence(java.lang.String seq,
float wt)
getName
public java.lang.String getName()
getID
public java.lang.String getID()
getSequence
public java.lang.String getSequence()
getLength
public int getLength()
getWeight
public float getWeight()
getResidue
public java.lang.String getResidue(int pos)
insertResidue
public void insertResidue(java.lang.String s,
int pos)
deleteResidue
public void deleteResidue(int pos)
appentToSequence
public void appentToSequence(java.lang.String s)
reverseSequence
public void reverseSequence()
reverseComplementSequence
public void reverseComplementSequence()
setType
public void setType(boolean protein)
isProtein
public boolean isProtein()
complementSequence
public void complementSequence()
complement
private char complement(char c)
main
public static void main(java.lang.String[] args)